Another new paper: A nestling brachiopod in an Ordovician boring and its implications

I know, I know, several new papers lately. This spike in publications is a function of two things: The pandemic with its enforced isolation meant my colleagues and I had more time to finish manuscripts, and I belong to some wonderful networks of very productive scientists. This has all been highly collaborative.

This new paper (a cover story) in Palaios describes a tiny lingulid brachiopod found inside a boring drilled into an internal mold (steinkern) in the Middle Ordovician of Estonia. (Now this is esoteric paleontology!) The abstract —

ABSTRACT: A steinkern of an endoceratid nautiloid siphuncle [see top image] contains a Trypanites sozialis boring with a lingulate brachiopod Rowellella sp. shell inside. The steinkern of this endoceratid formed during early lithification of the sediment on the seafloor. The lithified steinkern of this siphuncle was either initially partially exposed to the seawater or was exhumed and stayed exposed on the seafloor, where it was colonized by boring organisms. This bioerosion resulted in numerous Trypanites borings in the siphuncle. After the death or exit of the Trypanites trace maker, a vacant boring was colonized by a small lingulate nestler Rowellella sp. This lingulate was likely preadapted to life in hard substrate borings when it first found its way into borings in living substrates in the Late Ordovician. The increased availability of hard substrate borings, combined with the increased predation pressure due to the GOBE, enhanced the colonization of hard substrate borings by lingulate brachiopods.

Trypanites sozialis Eisenack, 1934 (Tr) in steinkern of cephalopod from the Kunda Regional Stage, Kunda-Aru quarry (GIT 426-674-1).

Lingulate Rowellella sp.in Trypanites sozialis boring from Uuga cliff, Lasnamägi Regional Stage (Darriwilian), NW Estonia (TUG 1393-186).

That you to Olev Vinn and my other Swedish and Estonian colleagues!

Reference:

Vinn, O., Holmer, L.E., Wilson, M.A., Isakar, M., and Toom, U. 2023. A Rowellella (Lingulata, Brachiopoda) nestler in a Trypanites boring from the Middle Ordovician of Estonia: An early colonizer of hard substrate borings. Palaios 38: 240-245.

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The Ordovician Bioclaustration Revolution: A new paper

Bioclaustration is the process by which an organism is embedded within the growing skeleton of another. Bioclaustrations are fascinating in the fossil record because they give direct information about how two or more organisms lived together in the ancient past — a form of symbiosis. My Estonian and German colleagues have just published a paper in the journal Geobios on the rapid burst of bioclaustrations in the Late Ordovician. The senior author is the indefatigable Olev Vinn. The abstract tells the story —

ABSTRACT: There was a sudden increase in the diversity of bioclaustrations in the Sandbian (Late Ordovician) that continued somewhat more slowly in the Katian. The Sandbian was also the time when bioclaustrations became common, at least in Baltica. The major increase in the diversity of bioclaustrations in the Late Ordovician was an outcome of the GOBE [Great Ordovician Biodiversification Event], and we term it the Ordovician Bioclaustration Revolution. The Ordovician Bioerosion Revolution may partially be responsible for the beginning of the Ordovician Bioclaustration Revolution in the Sandbian, as a number of these early bioclaustrations started their growth from initial borings. The diversification of bioclaustrations in the Sandbian involves mostly bryozoans and, to a lesser extent, brachiopods as hosts. The Katian increase in bioclaustration diversity involves mostly corals as the hosts and was likely unrelated or at least less influenced by the Ordovician Bioerosion Revolution. A new broadly conical bioclaustration, Kuckerichnus kirsimaei nov. cgen., nov. csp., is here described from the growth surfaces of hemispherical trepostome bryozoan colonies of Diplotrypa bicornis, Mesotrypa orientalis and Mesotrypa excentrica from the early Sandbian (Late Ordovician) of Estonia.

The top image is from Figure 2 in the paper. The caption: Holotype GIT 343-45-2 of Kuckerichnus kirsimaei nov. cgen., nov. csp. in Diplotrypa bicornis from the Küttejõu opencast mine, Kukruse Regional Stage. B. Paratype GIT 343-45-4 of Kuckerichnus kirsimaei nov. cgen., nov. csp. in Diplotrypa bicornis from the Küttejõu opencast mine, Kukruse Regional Stage. C. Paratype GIT 343-45-5 of Kuckerichnus kirsimaei nov. cgen., nov. csp. in Diplotrypa bicornis from the Küttejõu opencast mine, Kukruse Regional Stage. D. Paratype GIT 343-48-1 of Kuckerichnus kirsimaei nov. cgen., nov. csp. in Mesotrypa orientalis from the Küttejõu opencast mine, Kukruse Regional Stage. Scale bars: 1 mm.

I enjoyed this project very much because it summarizes decades of work going back to when my friend Tim Palmer and I were working together for the first time in the 1980s. It is nice to see so many concepts and observations coming together into coherent, testable evolutionary hypotheses.

Reference:

Vinn, O., Wilson, M.A., Ernst, A. and Toom, U. 2023. The Ordovician bioclaustration revolution. Geobios (https://doi.org/10.1016/j.geobios.2022.10.007) [Link goes to free pdf until July 25, 2023.]

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A new paper on brachiopod symbiosis in the Early Paleozoic

My Estonian colleague and friend Olev Vinn and I have been working for many years on examples of parasitism recorded in the fossil record. For the last couple of years we have been summarizing the data and assessing paleoecological and evolutionary patterns through the Phanerozoic. One of our review papers was published today in the journal Historical Biology. Lars Holmer, an expert on brachiopods from Uppsala University in Sweden, joined the team for this work. Here is the abstract —

The evolution of brachiopod symbiosis is closely tied to the evolution of brachiopod faunas and their partner groups during the early Palaeozoic. Brachiopod groups with a larger number of taxa had more symbiotic associations, and there was no specific group that was more prone to symbiosis during this time interval. The first symbiotic associations appeared soon after the emergence of certain brachiopod groups, with Cambrian brachiopods partnering with typical representatives of the Cambrian fauna. Bryozoans and tentaculitoid tubeworms, which became important partners during the Ordovician and Silurian, first diversified in the Ordovician. The gradual decrease in the number of brachiopod partner groups from the Cambrian to the Silurian was likely due to specialisation. However, the number of symbiotic associations did not increase faster than the number of brachiopod taxa. The GOBE-induced diversification of brachiopod taxa did not lead to an escalation in symbiotic relationships. Symbiotic associations involving brachiopods continued after the end-Ordovician mass extinction. Although early Palaeozoic brachiopods were vulnerable to kleptoparasites, the harm caused by these parasites was not enough to drive their associated brachiopods to extinction.

The caption for the top image from the paper: Figure 1. (A) Burrinjuckia clitambonitofilia bioclaustration in the rhynchonelliform brachiopod Clitmabonites squamatus from the Sandbian of NE Estonia (GIT 343–236).

As always, I learned a great deal from my colleagues on this project.

Reference:

Vinn, O., Holmer, L.E. and Wilson, M.A. 2023. Evolution of brachiopod symbiosis in the early Paleozoic. Historical Biology (https://doi.org/10.1080/08912963.2023.2212368)

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Consequences of publishing fraud: A geosciences journal placed on probation

In the Fall of 2021, in the depths of the covid pandemic, I found a long series of fake papers in the Springer Nature Arabian Journal of Geosciences. These were blatant frauds, with nonsense titles, nonsense references, and nonsense text in between. I reported these papers to the editors and then posted a description on the anonymous publishing watchdog site PubPeer. Internet sleuths then found many more fake papers in this journal. The story made it to the front page of The Chronicle of Higher Education, and eventually to the journal Nature. This history is detailed in a previous post.

Now, after hundreds of paper retractions by Springer Nature, the Arabian Journal of Geosciences has been placed in a kind of probation (see above screenshot). Clarivate Analytics has removed the journal’s listing from Web of Science for at least 2 years. The indexing service Scopus has at least temporarily dropped the journal.

Scientific publishing is experiencing a growing flood of fake papers produced by lucrative “paper mills” that sell manuscripts to would-be authors and then take advantage of corrupt and inept editorial systems to get them published. The common practice of Article Processing Charges (APCs), by which authors pay to have their papers published, has greatly accelerated the fraud. Journal editorial boards are often more interested in receiving the fees than ensuring quality in the published papers. We need a new model for ensuring the integrity of scientific publication — a model that encourages honest peer review and editorial gatekeeping. Without a change, confusion and mistrust will tear at the fabric of scientific research and its countless contributions.

I keep track of these issues through the blogs For Better Science and Retraction Watch.

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An Analysis of the Effects of Water Chemistry on Diatom Ecology Over Time in the American Upper Midwest — The Independent Study project of Richard Torres (’23)

Editor’s Note: Independent Study (IS) at The College of Wooster is a three-course series required of every student before graduation. Earth Sciences students typically begin in the second semester of their junior years with project identification, literature review, and a thesis essentially setting out the hypotheses and parameters of the work. Most students do fieldwork or lab work to collect data, and then spend their senior years finishing extensive Senior I.S. theses. Richard Torres was advised by Mark Wilson (me!). The following is his thesis abstract —

In this study, I investigated changes in diatom population composition in relation to water chemistry in North American Upper Midwest lakes over the past three decades. I collected diatom samples from several lakes (Ohio, Minnesota, Wisconsin, North and South Dakota) using sediment cores and sediment traps. I observed an increase in the average diversity of diatoms over the three decades, but no significant similarity between the diversities of the lakes. I calculated the dissimilarity of the populations through Bray-Curtis Dissimilarity, finding it to be moderate to high between the lakes through time, with an average dissimilarity of 70 percent, which indicates a high difference between the population makeups between the lakes, past and present.

To analyze how diatom assemblages shifted regarding changes in water chemistry and other environmental factors, I used both bivariate correlation on diversity and general linear models with repeated measures on diatom population composition. From this analysis, I found that pH has a stronger effect and specific conductivity has a weaker effect on diatom diversity when compared to three decades ago. On individual genera, pH and water clarity did not have a significant effect on diatom assemblages, while total dissolved solids did. Moreover, individual genera were less influenced by specific conductivity than they were three decades ago. When analyzing modern diatom assemblages in relation to water chemistry, I found that pH, oxidation-reduction potential, specific conductivity, salinity, total dissolved solids, and water density all had significant effects.

There were potential difficulties and sources of error in this study. For instance, I used a smaller number of diatoms than recommended in other studies, and there were difficulties in identifying certain genera. Survivor bias was also possible, where the diatoms studied might not be representative of the lakes’ populations as some might have been destroyed between life and being mounted on the slide, by predation, silica dissolution, and fragmentation during centrifuging, among other hazards. This study holds implications for lacustrine resource management and climate reconstruction, as there is little to no research regarding changes to diatom ecology in the American Midwest in the past 20 years, furthermore, no research has been done looking at the effects of water density on diatoms. Further research is needed to better understand diatom’s complex interactions with their environment.

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The Gunlock Member: Description of a Proposed New Member of the Carmel Formation (Middle Jurassic) of Southwestern Utah — The Independent Study project of Lucie Fiala (’23)

Editor’s Note: Independent Study (IS) at The College of Wooster is a three-course series required of every student before graduation. Earth Sciences students typically begin in the second semester of their junior years with project identification, literature review, and a thesis essentially setting out the hypotheses and parameters of the work. Most students do fieldwork or lab work to collect data, and then spend their senior years finishing extensive Senior I.S. theses. Lucie Fiala was advised by Mark Wilson (me!) and was on Team Utah 2022. The following is her thesis abstract —

This Independent Study investigates the paleoecology and stratigraphy of the lower Carmel Formation in southwestern Utah. The Co-op Creek Member and the here proposed Gunlock Member of the Carmel Formation are mostly limestone units formed during the Bajocian (Middle Jurassic). During the Middle Jurassic, much of western North America was covered by an epicontinental seaway called the Sundance Sea, which stretched from southern British Colombia to Utah. In this study there are four principle locations (Eagle Mountain Ranch, Manganese Wash, Dammeron Valley, and Jackson Peak) of study. The proposed Gunlock Member was formed in a low energy, intertidal environment. It is characterized by stromatolite and thrombolite layers, trace fossils, and bivalves. The overlying Co-op Creek Member was formed after a transgression in a high energy, subtidal environment and is characterized by its ooid-rich limestones, shales, and abundant fossils.

The boundary between the Co-op Creek and proposed Gunlock divides these members into the underlying stromatolitic member and the overlying ooid-rich member, and indicates a significant transgression. The Bajocian saw a few notable global transgressions that roughly coincide with that of the Sundance Sea; while there are several theories as to the cause of these rises in sea level, tectonic and glacial activity are the most likely.

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The Nuclear Densitometer: Its Design, Use in Construction, and an Experimental Application — The Independent Study project of Addie Tagg (’23)

Editor’s Note: Independent Study (IS) at The College of Wooster is a three-course series required of every student before graduation. Earth Sciences students typically begin in the second semester of their junior years with project identification, literature review, and a thesis essentially setting out the hypotheses and parameters of the work. Most students do fieldwork or lab work to collect data, and then spend their senior years finishing extensive Senior I.S. theses. Addie Tagg was advised by Mark Wilson (me!). The following is her thesis abstract —

The nuclear densitometer, or nuclear gauge, is a tool that is used to take the most accurate measurements of density and moisture content in soils, aggregates, and other materials. These measurements are used for many aspects of construction. The gauge takes density measurements based on the radioactive source Cesium-137. Key concepts for understanding how the gauge operates include photoelectric absorption, Compton scattering, and pair production. It is impossible to measure the reaction of a beam through a material, but it is possible to calculate the percentage of a source that is absorbed. The source that is not absorbed is reflected. The denser that a soil is, fewer waves are detected. After the device is calibrated and the number of reflected particles is counted, this number can then be translated into wet density. Alternative methods of recording density include the dynamic cone penetrometer and sand replacement. Overall, the nuclear densitometer is the easiest and least destructive method of density testing. The gauge does not directly measure water content, but instead measures hydrogen. This fact led me to an experiment to inquire if a common household weed killer would affect the gauge’s ability to take accurate measurements. The experiment included three trials using two layers of crushed limestone, each with a different substance applied (dry stone, water, or weed killer), compacted with a hand tamper and measured for compaction with the nuclear gauge. Overall, the weed killer did not affect the gauge’s ability to take an accurate measurement.

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Creating a Hydrological Profile of Northern Shreve, Ohio, Through Groundwater Well Analysis — The Independent Study project of Ryan Sullivan (’23)

Editor’s Note: Independent Study (IS) at The College of Wooster is a three-course series required of every student before graduation. Earth Sciences students typically begin in the second semester of their junior years with project identification, literature review, and a thesis essentially setting out the hypotheses and parameters of the work. Most students do fieldwork or lab work to collect data, and then spend their senior years finishing extensive Senior I.S. theses. Ryan Sullivan was advised by Mark Wilson (me!). The following is his thesis abstract —

In this study I created a hydrological and geological profile across a series of private groundwater wells in Shreve, Ohio. I started by making a cross section of this area through well log data. I discovered that this consists of alternating layers of shale and sandstone, as well as varying depths of glacial deposits. These changes in sediment and bedrock allow for a distinct groundwater flow, as well as different extraction rates. By analyzing the topography of the greater Shreve area, I also identified the drainage basin for this aquifer and potential sources of surface water and groundwater interactions. To assess water quality, I sampled two private wells located above this aquifer, testing for major trace elements. I found that the water utilized by these residents of Shreve is mostly free of contamination; however, there is eight to nine times the accepted maximum concentration limit of thallium. Long-term exposure to excess thallium can result in adverse health effects, so I present possible mitigation strategies, as well as a new potential well site that could be utilized to maximize groundwater extraction while minimizing contamination levels.

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Trace Fossils in the Middle Jurassic Carmel Formation of Southwestern Utah — The Independent Study project of Shipei (Vicky) Wang (’23)

Editor’s Note: Independent Study (IS) at The College of Wooster is a three-course series required of every student before graduation. Earth Sciences students typically begin in the second semester of their junior years with project identification, literature review, and a thesis essentially setting out the hypotheses and parameters of the work. Most students do fieldwork or lab work to collect data, and then spend their senior years finishing extensive Senior I.S. theses. Shipei (Vicky) Wang was advised by Mark Wilson (me!) and was on Team Utah 2022. The following is her thesis abstract —

My research is about the invertebrate trace fossils in the Middle Jurassic (Bajocian) Carmel Formation of southwestern Utah. In this study, I focus on three types of trace fossils, Gyrochorte Heer, Lockeia James, and Lingulichnus Hakes, 1976. In De Gibert and Ekdale’s (1999) research, the trace fossils they found in the Carmel of central Utah represent an environmentally-stressed benthic community in a marginal marine, restricted setting, with salinities above normal marine and with depletion of oxygen in pore waters. Our study site is in southwest Utah, which was more marginalized and restricted than that of De Gibert and Ekdale (1999) in the Bajocian. My hypothesis is that our trace fossils will have a similar restricted trend with what De Gibert and Ekdale (1999) found in central Utah but show more characteristics related to marginalized and restricted marine settings (such as lower diversity and smaller sizes). In my study, the width of Gyrochorte fossils do not have a significant difference from what De Gibert and Ekdale (1999) found in central Utah. Besides that, the trace fossils we found in the Bajocian of southwest Utah have less diversity. My results did not show characteristics related to more marginalized and restricted marine settings.

Lingulichnus in bedding plane view. (See this blog post for details.)

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A new paper on crinoids from the Wooster Shale (Lower Carboniferous, Tournaisian) of northeastern Ohio

My wonderful Ohio State colleague Bill Ausich and I have a new paper in the Journal of Paleontology. It just appeared this morning online. It is Open Access, but let me know if you want a pdf and can’t get it through this link. Here is the title and abstract:

Crinoids from the Wooster Shale Member of the Cuyahoga Formation,
Carboniferous (Mississippian, Tournaisian) of northeastern Ohio

Abstract.—Nine crinoids are described from the Wooster Shale Member of the Cuyahoga Formation from Wayne and Ashland counties, Ohio, USA. Identifiable elements of the fauna include five camerate crinoids, one flexible crinoid, and three other eucladid crinoids. Five new species are described, including Cactocrinus woosterensis n. sp., Cusacrinus brushi n. sp., Agaricocrinus murphyi n. sp., Decadocrinus laevis n. sp., and Decadocrinus inordinatus n. sp. Overall, the distribution of crinoid clades in the Wooster Shale is similar to that of the stratigraphically lower Meadville Shale Member of the Cuyahoga Formation, although less diverse and with only one species (Cyathocrinites simplex) in common. Many of the Wooster Shale Member crinoids are completely or partially preserved with siderite either in nodules or within siderite beds. These crinoids are commonly preserved in trauma postures, which is characteristic of burial in episodic high turbulence events. The paleoenvironments and taxa of the two Cuyahoga Formation crinoid faunas more closely resemble Viséan faunas in siliciclastic settings than typical carbonate faunas of the Tournaisian.
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The long and narrow image at the top of this post is the new species Cactocrinus woosterensis, named after The College of Wooster for its long support of paleontology research. The scale bar is 5.0 mm.

This is the new species Cusacrinus brushi, named in honor of Dr. Nigel Brush, a friend and colleague from Ashland University and now with a visiting position at Wooster. He also helped greatly in the field work for this study. The scale bar here is 10 mm. Note the specimen is replaced with the iron carbonate mineral siderite. Generations of Wooster geology students will recognize these reddish rocks from local outcrops.

What a delightful project this was! As always, I learn a great deal from my colleagues with these investigations.

[Later addition: Check out the blog post on the Journal of Paleontology site.]

Reference:

Ausich, W.I. and Wilson, M.A. 2023. Crinoids from the Wooster Shale Member of the Cuyahoga Formation, Carboniferous (Mississippian, Tournaisian) of northeastern Ohio. Journal of Paleontology (online).

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