Polygons are common in nature, whether in two dimensions as desiccation cracks or in three dimensions as with columnar basalt. They result from “closely-packed” disks or tubes. The honeycomb coral (Favosites Lamarck 1816) is one of the best fossil examples of hexagonal packing.
Favosites appeared in the Late Ordovician (about 460 million years ago) and went extinct in the Permian (roughly 273 million years ago). It consists of a series of calcitic tubes (corallites) packed together as closely as possible, thus the resemblance to a honeycomb. The corallites share common walls with each other. They were occupied by individuals known as polyps that were much like today’s modern coral polyps. They had tentacles that extended into the surrounding seawater to collect tiny prey such as larvae and micro-arthropods. (I’m confident here because we actually have fossils showing the soft polyps themselves.)
As you can see in the drawings above, the corallites are distinguished by internal horizontal partitions called tabulae and holes in the walls termed mural pores. These pores most likely allowed internal soft tissue connections between the polyps so that they could share digested nutrients.
Favosites as a genus has a very long history. It was named by the famous French natural historian and war hero Jean-Baptiste Lamarck. It is a favorite in paleontology courses because it is so easily recognized.